Selected Publications and Patents / Vybrané publikace a patenty

• Hrabák J., Chudackova E., Walkova R. Matrix-Assisted Laser Desorption Ionization–Time of Flight (MALDI-TOF) Mass Spectrometry for Detection of Antibiotic Resistance Mechanisms: from Research to Routine Diagnosis. Clinical Microbiology Reviews 26, 2013: 103 – 114, DOI: 10.1128/CMR.00058-12
• Hrabák J., Papagiannitsis C.C., Chudáčková E. Detection of carbapenemases in Enterobacteriaceae: a challenge for diagnostic microbiological laboratories. Clinical Microbiology and Infection 20, 2014: 839-853. DOI: 10.1111/1469-0691.12678
• Studentova V., Papagiannitsis C.C., Izdebski R., Pfeifer Y., Chudackova E., Bergerova T., Gniadkowski M., Hrabak J. Detection of OXA-48-type carbapenemase-producing Enterobacteriaceae in diagnostic laboratories can be enhanced by addition of bicarbonates to cultivation media or reaction buffers. Folia Microbiologica 2014: in press. DOI: 10.1007/s12223-014-0349-8
• Papagiannitsis C.C., Kotsakis S.D., Tuma Z., Gniadkowski M., Miriagou V., Hrabak J. Identification of CMY-2-type cephalosporinases in clinical isolates of Enterobacteriaceae by MALDI-TOF MS. Antimicrobial Agents and Chemotherapy 58 (5), 2014: 2952 - 2957. DOI: 10.1128/AAC.02418-13
• Hrabák J., Walková R., Študentová V., Chudáčková E., Bergerová T. Carbapenemase Activity Detection by Matrix-Assisted Laser Desorption/Ionisation Time-of-Flight Mass Spectrometry. Journal of Clinical Microbiology 49, 2011: 3222 - 3227; DOI: 10.1128/JCM.00984-11
• Hrabák J., Studentová V., Walková R., Zemlicková H., Jakubu V., Chudácková E., Gniadkowski M., Pfeifer Y., Perry J.D., Wilkinson K., Bergerová T. Detection of NDM-1, VIM-1, KPC, OXA-48, and OXA-162 carbapenemases by MALDI-TOF mass spectrometry. Journal of Clinical Microbiology 50, 2012: 2441 – 2443, DOI: 10.1128/JCM.01002-12.

Patents / Patenty

• PV2013-473 / Nr. 304833 (Method of Detection of Gram-negative Bacteria Periplasmic Space and Cell Wall Outer Membrane Proteins by Mass Spectrometry / Způsob detekce beta-laktamáz gramnegativních bakterií hmotnostní spektrometrií) – Czech National Patent (Český národní patent)

Publications of Team Members / Publikace členů týmu

• Studentova V., Dobiasova H., Hedlova D., Dolejska M., Papagiannitsis C.C., Hrabak J. Complete nucleotide sequence of two NDM-1-encoding plasmids characterized from the same Sequence type 11 Klebsiella pneumoniae. Antimicrobial Agents and Chemotherapy 2014: in press.
• Trojánek M., Dědičová D., Zemličková H., Jakubů V., Malíková E., Reisingerová M., Gabrielová A., Papagiannitsis C.C., Hrabák J., Horová B., Urbášková P., Marešová V., Stejskal F. Enteric fever imported to the Czech Republic: epidemiology, clinical characteristics and antimicrobial susceptibility. Folia Microbiologica 2014: in press. DOI: 10.1007/s12223-014-0348-9
• Studentova V., Papagiannitsis C.C., Izdebski R., Pfeifer Y., Chudackova E., Bergerova T., Gniadkowski M., Hrabak J. Detection of OXA-48-type carbapenemase-producing Enterobacteriaceae in diagnostic laboratories can be enhanced by addition of bicarbonates to cultivation media or reaction buffers. Folia Microbiologica 2014: in press. DOI: 10.1007/s12223-014-0349-8
• Kolínská R., Španělová P., Dřevínek M., Hrabák J., Žemličková H. Species identification of strains belonging to genus Citrobacter using the biochemical method and MALDI-TOF mass spectrometry. Folia Microbiologica 2014: in press. DOI 10.1007/s12223-014-0340-4
• Papagiannitsis C.C., Študentová V., Jakubů V., Španělová P., Urbášková P., Žemličková H., Hrabák J., Czech Participants of European Antimicrobial Resistance Surveillance Network. High prevalence of ST131 among CTX-M-producing Escherichia coli from community-acquired infections in the Czech Republic. Microbial Drug Resistance 2014: in press.
• Hrabák J., Papagiannitsis C.C., Chudáčková E. Detection of carbapenemases in Enterobacteriaceae: a challenge for diagnostic microbiological laboratories. Clinical Microbiology and Infection 20, 2014: 839-853. DOI: 10.1111/1469-0691.12678
• Papagiannitsis C.C., Kotsakis S.D., Tuma Z., Gniadkowski M., Miriagou V., Hrabak J. Identification of CMY-2-type cephalosporinases in clinical isolates of Enterobacteriaceae by MALDI-TOF MS. Antimicrobial Agents and Chemotherapy 58 (5), 2014: 2952 - 2957. DOI: 10.1128/AAC.02418-13
• Amlerova J., Studentova V., Hrabak J. Identification of Mycobacterium spp. isolates using MALDI-TOF mass spectrometry. Epidemiologie, mikrobiologie, imunologie 63, 2014: 195-198.
• Glasner C., Albiger B., Buist G., Tambić Andrašević A., Cantón R, Carmeli Y., Friedrich A. W., Giske C. G., Glupczynski Y., Gniadkowski M., Livermore D.M., Nordmann P., Poirel L., Rossolini G.M., Seifert H., Vatopoulos A., Walsh T., Woodford N., Donker T., Monnet D.L., Grundmann H. and the European Survey on Carbapenemase-Producing Enterobacteriaceae (EuSCAPE) working group. Carbapenemase-producing Enterobacteriaceae in Europe: a survey among national experts from 39 countries, February 2013. Eurosurveillance 2013: 18(28):pii=20525.
• Hrabák J., Papagiannitsis C.C., Študentová V., Jakubů V., Fridrichová M., Žemličková H. and Czech Participants of European Antimicrobial Resistance Surveillance Network. First outbreaks of carbapenemase-producing Klebsiella pneumoniae in the Czech Republic in 2011. Eurosurveillance 2013: 18(45):pii=20626.
• Papagiannitsis C.C., Studentova V., Hrabak J., Kubele J., Jindrák V., Zemlickova H. Isolation from a non-clinical sample of a Leclercia adecarboxylata producing a VIM-1 metallo-β-lactamase. Antimicrobial Agents and Chemotherapy 57, 2013: 2896 – 2897. DOI: 10.1128/AAC.00052-13
• Papagiannitsis C.C., Studentova V., Ruzicka F., Tejkalova R., Hrabák J. Molecular characterization of metallo--lactamase producing Pseudomonas aeruginosa in a Czech hospital (2009-2011). Journal of Medical Microbiology 62, 2013: 945 – 947. DOI: 10.1099/jmm.0.056119-0
• Papagiannitsis C.C., Studentova V., Chudackova E., Bergerova T., Hrabák J., Raděj J., Novak I. Identification of a New Delhi Metallo-β-lactamase-4 (NDM-4)-producing Enterobacter cloacae from a Czech patient previously hospitalized in Sri Lanka. Folia Microbiologica 58, 2013: 547 - 549. DOI: 10.1007/s12223-013-0247-5
• Hrabák J., Chudackova E., Walkova R. Matrix-Assisted Laser Desorption Ionization–Time of Flight (MALDI-TOF) Mass Spectrometry for Detection of Antibiotic Resistance Mechanisms: from Research to Routine Diagnosis. Clinical Microbiology Reviews 26, 2013: 103 – 114, DOI: 10.1128/CMR.00058-12
• Janouškovcová H., Raděj J., Musílek J., Vacková Z., Kozáková J., Kriz P., Bergerová T., Hrabák J. Infection by Neisseria meningitidis serogroup W135 belonging to the unusual clone ST-3342 in the Czech Republic. Folia Microbiologica 58, 2013: 85 – 86. DOI: 10.1007/s12223-012-0177-7.
• Hrabák J., Studentová V., Walková R., Zemlicková H., Jakubu V., Chudácková E., Gniadkowski M., Pfeifer Y., Perry J.D., Wilkinson K., Bergerová T. Detection of NDM-1, VIM-1, KPC, OXA-48, and OXA-162 carbapenemases by MALDI-TOF mass spectrometry. Journal of Clinical Microbiology 50, 2012: 2441 – 2443, DOI: 10.1128/JCM.01002-12.
• Hrabák J., Štolbová M., Študentová V., Fridrichová M., Chudáčková E., Zemlickova H. NDM-1 producing Acinetobacter baumannii isolated from a patient repatriated to the Czech Republic from Egypt, July 2011. Eurosurveillance 2012;17(7):pii=20085.
• Hrabák J., Walková R., Študentová V., Chudáčková E., Bergerová T. Carbapenemase Activity Detection by Matrix-Assisted Laser Desorption/Ionisation Time-of-Flight Mass Spectrometry. Journal of Clinical Microbiology 49, 2011: 3222 - 3227; DOI: 10.1128/JCM.00984-11
• Hrabák J., Niemczyková J., Chudackova E., Fridrichova M., Studentova V., Cervena D., Urbaskova P., Zemlickova H. KPC-2-producing Klebsiella pneumoniae isolated from a Czech patient previously hospitalized in Greece and in vivo selection of colistin resistance. Folia Microbiologica, 56, 2011: 361 - 365; DOI: 10.1007/s12223-011-0057-6
• Hrabák J., Červená D., Izdebski R., Duljasz W., Gniadkowski M., Fridrichová M., Urbášková P., Žemličková H. Regional spread of Pseudomonas aeruginosa ST357 producing the IMP-7 metallo-β-lactamase in the Central Europe, Journal of Clinical Microbiology, 49, 2011: 474-475.
• Chudáčková E., Geigerová L., Hrabák J., Bergerová T., Liška V., Scharfen J. Seven isolates of Actinomyces turicensis from patients with surgical infections of anogenital area in a Czech Hospital, Journal of Clinical Microbiology, 48, 2010: 2660 – 2661.
• Chudáčková E., Bergerová T., Fajfrlík K., Červená D., Urbášková P., Empel J., Gniadkowski M., Hrabák J. Carbapenem-non-susceptible strains of Klebsiella pneumoniae producing SHV-5 and/or DHA-1 β-lactamases in a Czech hospital, FEMS Microbiology Letters, 309, 2010: 62-70.
• Empel J., Hrabák J., Kozińska A., Bergerová T., Urbášková P., Kern-Zdanowicz I., Gniadkowski M. DHA-1-producing Klebsiella pneumoniae in a teaching hospital in the Czech Republic, Microbial Drug Resistance 16, 2010: 291-295.
• Hrabák J., Empel J., Bergerová T., Fajfrlík K., Urbášková P., Kern-Zdanowicz I., Hryniewicz W., Gniadkowski M.: International clones of Klebsiella pneumoniae and Escherichia coli with extended-spectrum β-lactamases (ESBLs) in a Czech hospital, Journal of Clinical Microbiology 47, 2009: 3353 – 3357.
• Stechova K., Pomahacova R., Hrabak J., Durilova M., Sykora J., Chudoba D., Stavikova V., Flajsmanova K., Varvarovska J. Reactivity to Helicobacter pylori Antigens in Patients Suffering from Thyroid Gland Autoimmunity. Experimental and Clinical Endocrinology and Diabetes 117, 2009: 423 – 431.
• Hrabák J., Empel J., Gniadkowski M., Halbhuber Z., Rébl K., Urbášková P.: CTX-M-15-producing Shigella sonnei from a Czech patient who traveled in Asia. Journal of Clinical Microbiology, 46, 2008: 2147 – 2148.